Analysis of Environmental Data : Exploratory and Euclidean methods in Environmental sciences ![[R logo]](../../../doc/html/logo.jpg)
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A B C D E F G H I J K L M N O P Q R S T U V W Y Z misc
-- A --
| abouheif_eg | Phylogenies and quantitative traits from Abouheif |
| acacia | Spatial pattern analysis in plant communities |
| acm.burt | Multiple Correspondence Analysis |
| acm.disjonctif | Multiple Correspondence Analysis |
| add.position.triangle | Triangular Plotting |
| add.scatter.eig | Scatter Plot |
| ade4toR | Format Change Utility |
| aminoacyl | Codon usage |
| ardeche | Fauna Table with double (row and column) partitioning |
| area_plot | Graphical Display of Areas |
| area.util.contour | Graphical Display of Areas |
| area.util.xy | Graphical Display of Areas |
| area2link | Graphical Display of Areas |
| area2poly | Graphical Display of Areas |
| arrival | Arrivals at an intensive care unit |
| as.dudi | Duality Diagram |
| as.randtest | Class of the Permutation Tests (in C). |
| as.rtest | Class of the Permutation Tests (in R). |
| as_taxo | Taxonomy |
| atlas | Small Ecological Dataset |
| atya | Genetic variability of Cacadors |
| avijons | Bird species distribution |
| avimedi | Fauna Table for Constrained Ordinations |
| aviurba | Ecological Tables Triplet |
-- B --
| bacteria | Genomes of 43 Bacteria |
| banque | Table of Factors |
| baran95 | African Estuary Fishes |
| between | Between-Class Analysis |
| bf88 | Cubic Ecological Data |
| bicenter_wt | Double Weighted Centring |
| bordeaux | Wine Tasting |
| boxplot.acm | Multiple Correspondence Analysis |
| bsetal97 | Ecological and Biological Traits |
| buech | Buech basin |
| butterfly | Genetics-Ecology-Environment Triple |
-- C --
| c.ktab | the class of objects 'ktab' (K-tables) |
| cailliez | Transformation to make Euclidean a distance matrix |
| capitales | Road Distances |
| carni19 | Phylogeny and quantative trait of carnivora |
| carni70 | Phylogeny and quantitative traits of carnivora |
| carniherbi49 | Taxonomy, phylogenies and quantitative traits of carnivora and herbivora |
| cca | Canonical Correspondence Analysis |
| chatcat | Qualitative Weighted Variables |
| chats | Pair of Variables |
| chazeb | Charolais-Zebus |
| clementines | Fruit Production |
| coinertia | Coinertia Analysis |
| col.names | the class of objects 'ktab' (K-tables) |
| coleo | Table of Fuzzy Biological Traits |
| corvus | Corvus morphology |
-- D --
| deug | Exam marks for some students |
| discrimin | Linear Discriminant Analysis (descriptive statistic) |
| discrimin_coa | Discriminant Correspondence Analysis |
| dist_binary | Computation of Distance Matrices for Binary Data |
| dist_dudi | Computation of the Distance Matrix of a Statistical Triplet |
| dist_neig | Computation of the Distance Matrix associated to a Neighbouring Graph |
| dist.prop | Computation of Distance Matrices of Percentage Data |
| dist_quant | Computation of Distance Matrices on Quantitative Variables |
| dist2mat | Is a Distance Matrix Euclidean ? |
| dotchart.phylog | Representation of a quantitative variable in front of a phylogenetic tree |
| dotcircle | Representation of n values on a circle |
| doubs | Pair of Ecological Tables |
| dudi | Duality Diagram |
| dudi_acm | Multiple Correspondence Analysis |
| dudi_coa | Correspondence Analysis |
| dudi_dec | Decentred Correspondence Analysis |
| dudi_fca | Fuzzy Correspondence Analysis |
| dudi_mix | Ordination of Tables mixing quantitative variables and factors |
| dudi_nsc | Non symmetric correspondence analysis |
| dudi_pca | Principal Component Analysis |
| dudi_pco | Principal Coordinates Analysis |
| dunedata | Dune Meadow Data |
-- E --
| ecg | Electrocardiogram data |
| ecomor | Ecomorphological Convergence |
| elec88 | Electoral Data |
| enum_phylog | Plot phylogenies |
| escopage | K-tables of wine-tasting |
| euro123 | Triangular Data |
-- F --
| fission | Fission pattern and heritable morphological traits |
| foucart | K-tables Correspondence Analysis with the same rows and the same columns |
| friday87 | Faunistic K-tables |
| fruits | Pair of Tables |
-- G --
| gearymoran | Moran's I and Geary'c randomization tests for spatial and phylogenetic autocorrelation |
| granulo | Granulometric Curves |
| gridrowcol | Complete regular grid analysis |
-- H --
| haar2level | Multi Level Decomposition of unidimensional data |
| hclust2phylog | Create phylogeny |
| housetasks | Contingency Table |
-- I --
| ichtyo | Point sampling of fish community |
| inertia_dudi | Statistics of inertia in a one-table analysis |
| irishdata | Geary's Irish Data |
| is.dudi | Duality Diagram |
| is_euclid | Is a Distance Matrix Euclidean ? |
| is.ktab | the class of objects 'ktab' (K-tables) |
-- J --
| julliot | Seed dispersal |
| jv73 | K-tables Multi-Regions |
-- K --
| kcponds | Ponds in a nature reserve |
| kplot | Generic Function for Multiple Graphs in a K-tables Analysis |
| kplot_foucart | Multiple Graphs for the Foucart's Correspondence Analysis |
| kplot_mcoa | Multiple Graphs for a Multiple Co-inertia Analysis |
| kplot_mfa | Multiple Graphs for a Multiple Factorial Analysis |
| kplot_pta | Multiple Graphs for a Partial Triadic Analysis |
| kplot_sepan | Multiple Graphs for Separed Analyses in a K-tables |
| kplot_statis | Multiple Graphs of a STATIS Analysis |
| krandtest | Class of the Permutation Tests (in C). |
| ktab | the class of objects 'ktab' (K-tables) |
| ktab_data_frame | Creation of K-tables from a data frame |
| ktab_list_df | Creating a K-tables from a list of data frames. |
| ktab_list_dudi | Creation of a K-tables from a list of duality diagrams |
| ktab_match2ktabs | STATIS and Co-Inertia : Analysis of a series of paired ecological tables |
| ktab.util.names | the class of objects 'ktab' (K-tables) |
| ktab_within | Process to go from a Within Analysis to a K-tables |
-- L --
| lascaux | Genetic/Environment and types of variables |
| lingoes | Transformation of a Distance Matrix for becoming Euclidean |
| lizards | Phylogeny and quantitative traits of lizards |
-- M --
| macaca | Landmarks |
| macon | Wine Tasting |
| mafragh | Phyto-Ecological Survey |
| mantel_randtest | Mantel test (correlation between two distance matrices (in C).) |
| mantel_rtest | Mantel test (correlation between two distance matrices (in R).) |
| maples | Phylogeny and quantitative traits of flowers |
| mariages | Correspondence Analysis Table |
| mat2dist | Is a Distance Matrix Euclidean ? |
| mcoa | Multiple CO-inertia Analysis |
| meau | Ecological Data : sites-variables, sites-species, where and when |
| meaudret | Ecological Data : sites-variables, sites-species, where and when |
| mfa | Multiple Factorial Analysis |
| microsatt | Genetic Relationships between cattle breeds with microsatellites |
| mjrochet | Phylogeny and quantitative traits of teleos fishes |
| mld | Multi Level Decomposition of unidimensional data |
| mollusc | Faunistic Communities and Sampling Experiment |
| monde84 | Global State of the World in 1984 |
| morphosport | Athletes' Morphology |
| multispati | Multivariate spatial analysis |
| multispati_randtest | Multivariate spatial autocorrelation test (in C) |
| multispati_rtest | Multivariate spatial autocorrelation test |
-- N --
| nb2neig | Neighbourhood Graphs |
| neig | Neighbourhood Graphs |
| neig.util.GtoL | Neighbourhood Graphs |
| neig.util.LtoG | Neighbourhood Graphs |
| neig2mat | Neighbourhood Graphs |
| neig2nb | Neighbourhood Graphs |
| newick_eg | Phylogenetic trees in Newick format |
| newick2phylog | Create phylogeny |
| niche | Method to Analyse a pair of tables : Environmental and Faunistic Data |
| njplot | Phylogeny and trait of bacteria |
-- O --
| olympic | Olympic Decathlon |
| oribatid | Oribatid mite |
| orthobasis | Orthonormal basis for orthonormal transform |
| orthogram | Orthonormal decomposition of variance |
| ours | A table of Qualitative Variables |
-- P --
| palm | Phylogenetic and quantitative traits of amazonian palm trees |
| pap | Taxonomy and quantitative traits of carnivora |
| pcaiv | Principal component analysis with respect to instrumental variables |
| pcaivortho | Principal Component Analysis with respect to orthogonal instrumental variables |
| pcoscaled | Simplified Analysis in Principal Coordinates |
| perthi02 | Contingency Table with a partition in Molecular Biology |
| phylog | Phylogeny |
| PI2newick | Import data files from Phylogenetic Independance Package |
| plot.between | Between-Class Analysis |
| plot.coinertia | Coinertia Analysis |
| plot.discrimin | Linear Discriminant Analysis (descriptive statistic) |
| plot.foucart | K-tables Correspondence Analysis with the same rows and the same columns |
| plot.krandtest | Class of the Permutation Tests (in C). |
| plot.mcoa | Multiple CO-inertia Analysis |
| plot.mfa | Multiple Factorial Analysis |
| plot.multispati | Multivariate spatial analysis |
| plot.niche | Method to Analyse a pair of tables : Environmental and Faunistic Data |
| plot.pcaiv | Principal component analysis with respect to instrumental variables |
| plot_phylog | Plot phylogenies |
| plot.procuste | Simple Procruste Rotation between two sets of points |
| plot.pta | Partial Triadic Analysis of a K-tables |
| plot.randtest | Class of the Permutation Tests (in C). |
| plot.rtest | Class of the Permutation Tests (in R). |
| plot.sepan | Separated Analyses in a K-tables |
| plot.statis | STATIS, a method for analysing K-tables |
| plot.within | Within Analyses |
| poly2area | Graphical Display of Areas |
| prep.fuzzy.var | Fuzzy Correspondence Analysis |
| print.between | Between-Class Analysis |
| print.coinertia | Coinertia Analysis |
| print.discrimin | Linear Discriminant Analysis (descriptive statistic) |
| print.dudi | Duality Diagram |
| print.foucart | K-tables Correspondence Analysis with the same rows and the same columns |
| print.krandtest | Class of the Permutation Tests (in C). |
| print.ktab | the class of objects 'ktab' (K-tables) |
| print.mcoa | Multiple CO-inertia Analysis |
| print.mfa | Multiple Factorial Analysis |
| print.multispati | Multivariate spatial analysis |
| print.neig | Neighbourhood Graphs |
| print.niche | Method to Analyse a pair of tables : Environmental and Faunistic Data |
| print.orthobasis | Orthonormal basis for orthonormal transform |
| print.pcaiv | Principal component analysis with respect to instrumental variables |
| print.phylog | Phylogeny |
| print.procuste | Simple Procruste Rotation between two sets of points |
| print.pta | Partial Triadic Analysis of a K-tables |
| print.randtest | Class of the Permutation Tests (in C). |
| print.rtest | Class of the Permutation Tests (in R). |
| print.sepan | Separated Analyses in a K-tables |
| print.statis | STATIS, a method for analysing K-tables |
| print.within | Within Analyses |
| procella | Phylogeny and quantitative traits of birds |
| procuste | Simple Procruste Rotation between two sets of points |
| procuste_randtest | Monte-Carlo Test on the sum of the singular values of a procustean rotation (in C). |
| procuste_rtest | Monte-Carlo Test on the sum of the singular values of a procustean rotation (in R). |
| pta | Partial Triadic Analysis of a K-tables |
-- Q --
| quasieuclid | Transformation of a distance matrice to a Euclidean one |
-- R --
| radial.phylog | Plot phylogenies |
| randtest | Class of the Permutation Tests (in C). |
| randtest.between | Monte-Carlo Test on the between-groups inertia percentage (in C). |
| randtest_coinertia | Monte-Carlo test on a coinertia analysis (in C). |
| randtest_discrimin | Monte-Carlo Test on a Discriminant Analysis (in C). |
| rankrock | Ordination Table |
| reconst | Reconstitution of Data from a Duality Diagram |
| redo.dudi | Duality Diagram |
| rhone | Physico-Chemistry Data |
| row.names.ktab | the class of objects 'ktab' (K-tables) |
| rpjdl | Avifauna and Vegetation |
| rtest | Class of the Permutation Tests (in R). |
| rtest_between | Monte-Carlo Test on the between-groups inertia percentage (in R). |
| rtest_discrimin | Monte-Carlo Test on a Discriminant Analysis (in R). |
| Rtoade4 | Format Change Utility |
| RV_rtest | Monte-Carlo Test on the sum of eigenvalues of a co-inertia analysis (in R). |
-- S --
| s_arrow | Plot of the factorial maps for the projection of a vector basis |
| s_chull | Plot of the factorial maps with polygons of contour by level of a factor |
| s_class | Plot of factorial maps with representation of point classes |
| s_corcircle | Plot of the factorial maps of a correlation circle |
| s_distri | Plot of a frequency distribution |
| s_hist | Display of a scatterplot and its two marginal histograms |
| s_image | Graph of a variable using image and contour |
| s_label | Scatter Plot |
| s_match | Plot of Paired Coordinates |
| s_traject | Trajectory Plot |
| s_value | Representation of a value in a graph |
| santacatalina | Indirect Ordination |
| sarcelles | Array of Recapture of Rings |
| scalewt | Centring and Scaling a Matrix of Any Weighting |
| scatter | Scatter Plot |
| scatter_acm | Plot of the factorial maps in multiple correspondence analysis |
| scatter_coa | Plot of the factorial maps for a correspondence analysis |
| scatter_dudi | Plot of the Factorial Maps |
| scatter_fca | Plot of the factorial maps for a fuzzy correspondence analysis |
| scatter.pco | Principal Coordinates Analysis |
| scatterutil.base | Scatter Plot |
| scatterutil.chull | Scatter Plot |
| scatterutil.eigen | Scatter Plot |
| scatterutil.ellipse | Scatter Plot |
| scatterutil.eti | Scatter Plot |
| scatterutil.grid | Scatter Plot |
| scatterutil.legend.bw.square | Scatter Plot |
| scatterutil.legend.square.grey | Scatter Plot |
| scatterutil.legendgris | Scatter Plot |
| scatterutil.scaling | Scatter Plot |
| scatterutil.star | Scatter Plot |
| scatterutil.sub | Scatter Plot |
| sco_boxplot | Representation of the link between a variable and a set of qualitative variables |
| sco_distri | Representation by mean- standard deviation of a set of weight distributions on a numeric score |
| sco_quant | Graph to Analyse the Relation between a Score and Quantitative Variables |
| score | Graphs for One Dimension |
| score_acm | Graphs to study one factor in a Multiple Correspondence Analysis |
| score_coa | Graphs to analyse a factor in a correspondence analysis |
| score_mix | Graphs to Analyse a factor in a Mixed Analysis |
| score_pca | Graphs to Analyse a factor in PCA |
| scores.neig | Neighbourhood Graphs |
| scoreutil.base | Graphs for One Dimension |
| seconde | Students and Subjects |
| sepan | Separated Analyses in a K-tables |
| skulls | Morphometric Evolution |
| statis | STATIS, a method for analysing K-tables |
| steppe | Transect in the Vegetation |
| summary.coinertia | Coinertia Analysis |
| summary.dist | Is a Distance Matrix Euclidean ? |
| summary.mcoa | Multiple CO-inertia Analysis |
| summary.mfa | Multiple Factorial Analysis |
| summary.multispati | Multivariate spatial analysis |
| summary.neig | Neighbourhood Graphs |
| summary.sepan | Separated Analyses in a K-tables |
| summary.witwit | Internal Correspondence Analysis |
| supcol | Projections of Supplementary Columns |
| suprow | Projections of Supplementary Rows |
| symbols_phylog | Representation of a quantitative variable in front of a phylogenetic tree |
| syndicats | Two Questions asked on a Sample of 1000 Respondents |
-- T --
| t.dudi | Duality Diagram |
| t.ktab | the class of objects 'ktab' (K-tables) |
| t3012 | Average temperatures of 30 French cities |
| tab.names | the class of objects 'ktab' (K-tables) |
| table_cont | Plot of Contingency Tables |
| table_dist | Graph Display for Distance Matrices |
| table_paint | Plot of the arrays by grey levels |
| table_phylog | Plot arrays in front of a phylogenetic tree |
| table.prepare | Plot of the Arrays |
| table_value | Plot of the Arrays |
| tarentaise | Mountain Avifauna |
| taxo_eg | Examples of taxonomy |
| taxo2phylog | Create phylogeny |
| tintoodiel | Tinto and Odiel estuary geochemistry |
| tithonia | Phylogeny and quantitative traits of flowers |
| tortues | Morphological Study of the Painted Turtle |
| toxicity | Homogeneous Table |
| triangle.biplot | Triangular Plotting |
| triangle.param | Triangular Plotting |
| triangle_plot | Triangular Plotting |
| triangle.posipoint | Triangular Plotting |
| trichometeo | Pair of Ecological Data |
-- U --
| ungulates | Phylogeny and quantitative traits of ungulates. |
| uniquewt_df | Elimination of Duplicated Rows in a Array |
-- V --
| variance_phylog | The phylogenetic ANOVA |
| veuvage | Example for Centring in PCA |
-- W --
| westafrica | Freshwater fish zoogeography in west Africa |
| within | Within Analyses |
| within_pca | Normed within Principal Component Analysis |
| witwit_coa | Internal Correspondence Analysis |
| worksurv | French Worker Survey (1970) |
-- Y --
| yanomama | Distance Matrices |
-- Z --
| zealand | Road distances in New-Zealand |
-- misc --
| [.ktab | the class of objects 'ktab' (K-tables) |
